SMTL ID : 3ims.1

Transthyretin in complex with 2,6-dibromo-4-(2,6-dichlorophenethyl)phenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-tetramer

Ligands

4 x IW2: 2,6-dibromo-4-[2-(2,6-dichlorophenyl)ethyl]phenol(Non-covalent)

IW2.1: 15 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, A.109, L.110, S.117 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Ligands: IW2.3 9 PLIP interactions: 6 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:L.17, C:A.108, C:L.110, C:L.110, A:L.17, A:A.108 Hydrogen bonds: C:K.15, C:K.15, A:K.15 IW2.2: 15 residues within 4Å: Chain B: K.15, L.17, T.106, A.108, A.109, L.110, S.117 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Ligands: IW2.4 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:L.17, B:A.108, D:L.17, D:A.108, D:L.110, D:L.110 Hydrogen bonds: B:K.15, D:K.15 IW2.3: 15 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Chain C: K.15, L.17, T.106, A.108, A.109, L.110, S.117 Ligands: IW2.1 9 PLIP interactions: 3 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:L.17, C:A.108, A:L.17, A:A.108, A:L.110, A:L.110 Hydrogen bonds: C:K.15, A:K.15, A:K.15 IW2.4: 15 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Chain D: K.15, L.17, T.106, A.108, A.109, L.110, S.117 Ligands: IW2.2 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:L.17, B:A.108, B:L.110, B:L.110, D:L.17, D:A.108 Hydrogen bonds: B:K.15, D:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, S. et al., A substructure combination strategy to create potent and selective transthyretin kinetic stabilizers that prevent amyloidogenesis and cytotoxicity. J.Am.Chem.Soc. (2010)

Release Date

2010-01-12

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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