SMTL ID : 3imw.1

Transthyretin in complex with (E)-2,6-dibromo-4-(2,6-dimethoxystyryl)aniline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

homo-tetramer

Ligands

4 x IW6: 2,6-dibromo-4-[(E)-2-(2,6-dimethoxyphenyl)ethenyl]aniline(Non-covalent)

IW6.1: 18 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, A.109, L.110, S.117, T.118, T.119 Chain C: K.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119 Ligands: IW6.3 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:L.17, C:L.17 Hydrogen bonds: A:S.117, C:S.117, C:S.117 Halogen bonds: A:A.108, A:S.117 IW6.2: 18 residues within 4Å: Chain B: K.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119, V.121 Chain D: L.17, T.106, A.108, L.110, S.117, T.118, T.119, V.121 Ligands: IW6.4 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:L.17, D:L.17 Hydrogen bonds: B:S.117, B:S.117, D:S.117 Halogen bonds: D:A.108, D:S.117 IW6.3: 18 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119 Chain C: K.15, L.17, T.106, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: IW6.1 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:L.17, A:L.17 Hydrogen bonds: C:S.117, A:S.117, A:S.117 Halogen bonds: C:A.108, C:S.117 IW6.4: 18 residues within 4Å: Chain B: L.17, T.106, A.108, L.110, S.117, T.118, T.119, V.121 Chain D: K.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119, V.121 Ligands: IW6.2 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:L.17, D:L.17 Hydrogen bonds: B:S.117, D:S.117, D:S.117 Halogen bonds: B:A.108, B:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, S. et al., A substructure combination strategy to create potent and selective transthyretin kinetic stabilizers that prevent amyloidogenesis and cytotoxicity. J.Am.Chem.Soc. (2010)

Release Date

2010-01-12

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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