SMTL ID : 3kgu.1

Wild type human transthyretin (TTR) complexed with genistein (TTRwt:GEN) pH 7.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x GEN: GENISTEIN(Non-covalent)

GEN.1: 12 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.119 Chain C: K.15, L.17, A.108, L.110, T.119 Ligands: GEN.3 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:L.17, A:L.110, C:L.110 Hydrogen bonds: A:K.15, A:K.15, C:K.15 Water bridges: A:L.110, C:K.15, C:T.119 GEN.2: 14 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.119, V.121 Chain D: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: GEN.4 13 PLIP interactions: 7 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:K.15, D:L.17, D:L.110, B:L.17, B:L.110 Hydrogen bonds: D:K.15, D:S.117, D:S.117, B:K.15, B:K.15, B:S.117 Water bridges: D:L.110, B:L.110 GEN.3: 12 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, T.119 Chain C: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: GEN.1 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.17, C:L.110, A:L.110 Hydrogen bonds: C:K.15, C:K.15, A:K.15 Water bridges: C:L.110, A:K.15, A:T.119 GEN.4: 14 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.119 Chain D: K.15, L.17, A.108, L.110, S.117, T.119, V.121 Ligands: GEN.2 13 PLIP interactions: 6 interactions with chain D, 7 interactions with chain B Hydrophobic interactions: D:L.17, D:L.110, B:K.15, B:L.17, B:L.110 Hydrogen bonds: D:K.15, D:K.15, D:S.117, B:K.15, B:S.117, B:S.117 Water bridges: D:L.110, B:L.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trivella, D.B. et al., Conformational differences between the wild type and V30M mutant transthyretin modulate its binding to genistein: implications to tetramer stability and ligand-binding. J.Struct.Biol. (2010)

Release Date

2010-03-23

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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