SMTL ID : 3m1o.1

Human Transthyretin (TTR) complexed with 2-((3,5-dichloro-4-hydroxyphenyl)amino)benzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-tetramer

Ligands

4 x CJZ: 2-[(3,5-dichloro-4-hydroxyphenyl)amino]benzoic acid(Non-covalent)

CJZ.1: 16 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain C: K.15, A.108, A.109, L.110, S.117, T.118, T.119, V.121 Ligands: CJZ.3 11 PLIP interactions: 6 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:A.108, C:T.119, C:V.121, A:L.17, A:L.17, A:A.108 Water bridges: C:K.15, A:K.15 Salt bridges: C:K.15, A:K.15 Halogen bonds: C:S.117 CJZ.2: 16 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.118, T.119, V.121 Chain D: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: CJZ.4 13 PLIP interactions: 8 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:A.108, B:T.119, B:V.121, D:L.17 Hydrogen bonds: B:S.117, B:S.117, D:S.117 Water bridges: B:K.15, D:K.15 Salt bridges: B:K.15, D:K.15 Halogen bonds: B:S.117, D:S.117 CJZ.3: 16 residues within 4Å: Chain A: K.15, A.108, A.109, L.110, S.117, T.118, T.119, V.121 Chain C: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: CJZ.1 11 PLIP interactions: 5 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:L.17, C:L.17, C:A.108, A:A.108, A:T.119, A:V.121 Water bridges: C:K.15, A:K.15 Salt bridges: C:K.15, A:K.15 Halogen bonds: A:S.117 CJZ.4: 16 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, A.108, L.110, S.117, T.118, T.119, V.121 Ligands: CJZ.2 13 PLIP interactions: 8 interactions with chain D, 5 interactions with chain B Hydrophobic interactions: D:A.108, D:T.119, D:V.121, B:L.17 Hydrogen bonds: D:S.117, D:S.117, B:S.117 Water bridges: D:K.15, B:K.15 Salt bridges: D:K.15, B:K.15 Halogen bonds: D:S.117, B:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolstoe, S.E. et al., Trapping of palindromic ligands within native transthyretin prevents amyloid formation. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-11-17

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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