SMTL ID : 3mre.1

Crystal Structure of MHC class I HLA-A2 molecule complexed with EBV bmlf1-280-288 nonapeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY- LEU- CYS- THR- LEU- VAL- ALA- MET- LEU: 9-meric peptide from mRNA export factor EB2(Non-covalent)

GLY-LEU-CYS-THR-LEU-VAL-ALA-MET-LEU.1: 24 residues within 4Å: Chain A: M.5, Y.7, F.9, M.45, E.63, K.66, V.67, H.70, T.73, D.77, T.80, L.81, Y.84, Y.99, Y.116, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:Y.7, A:F.9, A:K.66, A:K.66, A:V.67, A:D.77, A:L.81, A:Y.116, A:Y.116, A:T.143, A:W.147, A:Q.155, A:L.156 Hydrogen bonds: A:E.63, A:D.77, A:Y.84, A:Y.99, A:Y.99, A:Y.116, A:T.143, A:K.146, A:Y.159, A:Y.171 Water bridges: A:K.66, A:K.66, A:K.66, A:D.77, A:D.77, A:R.97, A:R.97, A:R.97, A:R.97 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reiser, J.B. et al., Analysis of Relationships between Peptide/MHC Structural Features and Naive T Cell Frequency in Humans. J.Immunol. (2014)

Release Date

2011-05-25

Peptides

HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, A-2 alpha chain

Beta-2-microglobulin

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