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SMTL ID : 3p3r.1

Transthyretin in complex with (3,4-dihydroxy-5-nitrophenyl)(2-fluorophenyl)methanone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-tetramer

Ligands

4 x 3M1: (3,4-dihydroxy-5-nitrophenyl)(2-fluorophenyl)methanone(Non-covalent)

3M1.1:	14 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.118 Chain C: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: 3M1.3 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.17, C:A.108, C:L.110, A:L.17, A:A.108, A:L.110 Hydrogen bonds: C:K.15, C:K.15, A:K.15
3M1.2:	16 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.119, V.121 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: 3M1.4 10 PLIP interactions: 4 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:L.17, D:A.108, B:L.17, B:A.108, B:L.110 Hydrogen bonds: D:K.15, B:K.15, B:K.15 Water bridges: D:K.15, B:T.106
3M1.3:	14 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.119 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.118 Ligands: 3M1.1 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:L.17, C:A.108, C:L.110, A:L.17, A:A.108, A:L.110 Hydrogen bonds: C:K.15, A:K.15, A:K.15
3M1.4:	16 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, A.108, L.110, S.117, T.119, V.121 Ligands: 3M1.2 10 PLIP interactions: 6 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:L.17, D:A.108, D:L.110, B:L.17, B:A.108 Hydrogen bonds: D:K.15, D:K.15, B:K.15 Water bridges: D:T.106, B:K.15

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Alhamadsheh, M.M. et al., Potent kinetic stabilizers that prevent transthyretin-mediated cardiomyocyte proteotoxicity. Sci Transl Med (2011)

Release Date

2011-08-24

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

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NGLPV2D

Transthyretin

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