SMTL ID : 3p3u.1

Human transthyretin (TTR) complexed with 5-(2-ethoxyphenyl)-3-(pyridin-4-yl)-1,2,4-oxadiazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x 3M4: 4-[5-(2-ethoxyphenyl)-1,2,4-oxadiazol-3-yl]pyridine(Non-covalent)

3M4.1: 15 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, L.110, V.121 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: 3M4.3 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.17, A:T.106, A:L.110, A:V.121, C:L.17 3M4.2: 15 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, T.106, A.108, L.110, S.117, V.121 Ligands: 3M4.4 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:L.17, D:T.106, D:V.121, B:A.108, B:T.119 3M4.3: 15 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain C: K.15, L.17, T.106, A.108, L.110, V.121 Ligands: 3M4.1 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:L.17, C:L.17, C:T.106, C:L.110, C:V.121 3M4.4: 15 residues within 4Å: Chain B: K.15, L.17, T.106, A.108, L.110, S.117, V.121 Chain D: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: 3M4.2 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:L.17, B:T.106, B:V.121, D:A.108, D:T.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alhamadsheh, M.M. et al., Potent kinetic stabilizers that prevent transthyretin-mediated cardiomyocyte proteotoxicity. Sci Transl Med (2011)

Release Date

2011-08-24

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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