SMTL ID : 3sko.1

Crystal structure of the HLA-B8-A66-FLR, mutant A66 of the HLA B8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PHE- LEU- ARG- GLY- ARG- ALA- TYR- GLY- LEU: Epstein-Barr nuclear antigen 3(Non-covalent)

PHE-LEU-ARG-GLY-ARG-ALA-TYR-GLY-LEU.1: 34 residues within 4Å: Chain A: M.5, Y.7, D.9, F.22, S.24, F.36, Y.59, R.62, N.63, A.66, F.67, T.69, N.70, T.73, D.74, S.77, N.80, L.81, Y.84, L.95, S.97, Y.99, Y.116, Y.123, T.143, W.147, A.150, V.152, Q.155, D.156, Y.159, T.163, W.167, Y.171 43 PLIP interactions: 43 interactions with chain A Hydrophobic interactions: A:Y.7, A:F.36, A:Y.59, A:R.62, A:A.66, A:F.67, A:L.81, A:L.95, A:Y.99, A:Y.116, A:Y.123, A:W.147, A:A.150, A:V.152, A:Y.159, A:T.163, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:Y.59, A:N.63, A:N.70, A:N.70, A:S.77, A:N.80, A:S.97, A:T.143, A:Q.155, A:Y.159, A:Y.159, A:Y.171 Water bridges: A:T.73, A:Y.84, A:S.97, A:Y.116, A:Y.116, A:K.146, A:A.150 Salt bridges: A:D.9, A:D.74, A:K.146, A:D.156 pi-Stacking: A:W.167

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: W.133, T.134, A.135, Q.144 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.133, A:A.135, A:Q.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gras, S. et al., A structural basis for varied alpha-beta TCR usage against an immunodominant EBV antigen restricted to a HLA-B8 molecule. J.Immunol. (2012)

Release Date

2012-02-29

Peptides

HLA class I histocompatibility antigen, B-8 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-8 alpha chain

Beta-2-microglobulin

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