SMTL ID : 3u6t.1

Crystal structure of the complex of type I Ribosome inactivating protein in complex with Kanamycin at 1.85 A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: T.226, N.227, T.229, S.230 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227, A:S.230, A:S.230, A:N.231

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8, A:A.9, A:A.9

1 x KAN: KANAMYCIN A(Non-covalent)

KAN.3: 12 residues within 4Å: Chain A: V.69, Y.70, I.71, E.85, S.108, G.109, N.110, Y.111, I.155, A.159, E.160, R.163 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:N.110 Hydrogen bonds: A:V.69, A:I.71, A:I.71, A:E.85, A:S.108, A:G.109, A:G.109, A:N.110, A:Y.111, A:E.160, A:R.163, A:R.163 Water bridges: A:Y.70, A:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of the complex of type I Ribosome inactivating protein in complex with Kanamycin at 1.85 A. To be Published

Release Date

2011-11-16

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

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