SMTL ID : 4k2z.1

Crystal structure of the complex of type I Ribosome inactivating protein from Momordica balsamina with Methylethylamine at 1.80 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8 Water bridges: A:A.9, A:A.9 GOL.2: 4 residues within 4Å: Chain A: N.33, T.234, S.235, Q.238 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.33, A:T.234, A:Q.238 Water bridges: A:T.234

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: T.226, N.227, T.229 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:T.226, A:T.226, A:N.227, A:N.231

2 x ETN: METHYLETHYLAMINE(Non-covalent)

ETN.4: 5 residues within 4Å: Chain A: G.109, N.110, Y.111, E.112 Ligands: ETN.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.109, A:Y.111 ETN.5: 8 residues within 4Å: Chain A: V.69, Y.70, I.71, G.109, I.155, A.159, R.163 Ligands: ETN.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.155 Hydrogen bonds: A:I.71 Water bridges: A:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of the complex of type I Ribosome inactivating protein from Momordica balsamina with Methylethylamine at 1.80 A resolution. To be Published

Release Date

2013-05-01

Peptides

rRNA N-glycosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N-glycosidase

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