SMTL ID : 4fz9.1

Crystal structure of the complex of Ribosome inactivating protein from Momordica Balsamina with disaccharide, N-Acetylglucosamine (beta-1, 4) Mannose at 1.7 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-BMA.1: 11 residues within 4Å: Chain A: V.69, Y.70, I.71, E.85, G.109, N.110, Y.111, I.155, A.159, E.160, R.163 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.110, A:I.71, A:Y.111 Water bridges: A:S.108, A:S.108, A:I.71, A:R.163, A:R.163 Hydrophobic interactions: A:I.155, A:A.159 Salt bridges: A:R.163

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: T.226, N.227, T.229, S.230 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227, A:S.230, A:S.230, A:N.231

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.8 Water bridges: A:A.9 GOL.4: 4 residues within 4Å: Chain A: N.33, T.234, I.237, Q.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.33, A:T.234, A:Q.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of the complex of Ribosome inactivating protein from Momordica Balsamina with disaccharide, N-Acetylglucosamine (beta-1, 4) Mannose at 1.7 A resolution. To be Published

Release Date

2012-08-15

Peptides

rRNA N-glycosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N-glycosidase

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