SMTL ID : 4q9f.1

Crystal structure of type 1 ribosome inactivating protein from Momordica balsamina in complex with guanosine mono phosphate at 1.75 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: T.226, N.227, T.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227

1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.2: 9 residues within 4Å: Chain A: Y.70, I.71, E.85, G.109, N.110, Y.111, I.155, R.163, E.189 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.70, A:I.71, A:I.71, A:I.71, A:Y.111, A:R.163 Water bridges: A:N.110, A:E.112, A:R.163, A:R.163 Salt bridges: A:E.85 pi-Stacking: A:Y.70, A:Y.70

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.6, A.9, Y.55, P.130, A.175, Y.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.6 Water bridges: A:G.8, A:A.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kushwaha, G.S. et al., Crystal structure of type 1 ribosome inactivating protein from Momordica balsamina in complex with guanosine mono phosphate at 1.75 Angstrom resolution. To be Published

Release Date

2014-05-28

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

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