SMTL ID : 5ilw.1

Crystal structure of the complex of type 1 Ribosome inactivating protein from Momordica balsamina with Uridine at 1.97 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: T.226, N.227, T.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227

1 x URI: URIDINE(Non-covalent)

URI.2: 12 residues within 4Å: Chain A: Y.70, I.71, M.72, F.83, E.85, G.109, N.110, Y.111, E.112, I.155, E.160, R.163 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:I.71, A:I.71, A:G.109, A:Y.111, A:E.112, A:R.163, A:R.163 pi-Stacking: A:Y.70

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.6, A.9, Y.55, L.129, P.130, A.175, Y.176 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.6, A:A.9, A:A.175 Water bridges: A:G.8, A:G.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, S.N. et al., Binding and structural studies of the complexes of type 1 ribosome inactivating protein from Momordica balsamina with uracil and uridine. Proteins (2019)

Release Date

2016-03-23

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

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