- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 0MB: 1-(3-PHENYL-1,2,4-THIADIAZOL-5-YL)-1,4-DIAZEPANE(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: T.37, H.38, N.126, K.130
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.37, A:H.38, A:N.126
- Salt bridges: A:K.130
SO4.3: 5 residues within 4Å:- Chain A: H.38, V.43, A.62, E.63
- Ligands: EDO.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.63
- Salt bridges: A:H.38
SO4.4: 5 residues within 4Å:- Chain A: Q.139, A.140, E.141, H.142, T.145
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.141, A:H.142, A:T.145, A:T.145
- Water bridges: A:H.142
- Salt bridges: A:H.142
SO4.5: 8 residues within 4Å:- Chain A: E.56, A.57, E.58, F.71, K.74, L.75, R.78
- Chain B: R.78
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.57, A:E.58, A:E.58, A:F.71
- Salt bridges: A:K.74, B:R.78
SO4.6: 3 residues within 4Å:- Chain A: K.42, H.142, L.143
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.143
- Water bridges: A:K.144
- Salt bridges: A:K.42, A:H.142
SO4.19: 4 residues within 4Å:- Chain B: T.37, H.38, N.126, K.130
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:H.38, B:N.126
- Water bridges: B:T.37, B:T.37, B:K.130, B:K.130
- Salt bridges: B:H.38, B:K.130
SO4.20: 4 residues within 4Å:- Chain B: H.38, V.43, A.62, E.63
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.63
- Salt bridges: B:H.38
SO4.21: 5 residues within 4Å:- Chain B: Q.139, A.140, E.141, H.142, T.145
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.141, B:H.142, B:T.145
- Salt bridges: B:H.142
SO4.22: 3 residues within 4Å:- Chain B: K.42, H.142, L.143
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.143
- Water bridges: B:K.144
- Salt bridges: B:K.42, B:H.142
SO4.23: 8 residues within 4Å:- Chain A: R.78
- Chain B: E.56, A.57, E.58, F.71, K.74, L.75, R.78
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.56, B:A.57, B:E.58, B:F.71
- Salt bridges: B:K.74, A:R.78
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 6 residues within 4Å:- Chain A: P.29, G.30, P.80, I.175, D.178
- Ligands: 0MB.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:P.80, A:I.175, A:D.178
EDO.8: 4 residues within 4Å:- Chain A: A.99, A.100, W.103
- Chain B: M.149
No protein-ligand interaction detected (PLIP)EDO.9: 4 residues within 4Å:- Chain A: Y.70, K.74
- Chain B: E.58, K.144
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:K.144, A:Y.70, A:K.74, A:K.74
- Water bridges: B:E.58, B:E.58, B:V.59, B:Q.148
EDO.10: 4 residues within 4Å:- Chain A: E.63, T.64
- Ligands: SO4.3, CL.13
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.63
EDO.11: 4 residues within 4Å:- Chain A: G.53, V.121, M.125, H.154
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.154
EDO.12: 4 residues within 4Å:- Chain A: D.35, C.36, D.87, I.122
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:C.36, A:C.36
EDO.24: 7 residues within 4Å:- Chain B: P.29, G.30, P.80, I.175, D.178
- Ligands: 0MB.18, EDO.25
2 PLIP interactions:2 interactions with chain B- Water bridges: B:G.30, B:G.30
EDO.25: 3 residues within 4Å:- Chain B: K.82
- Ligands: 0MB.18, EDO.24
No protein-ligand interaction detected (PLIP)EDO.26: 3 residues within 4Å:- Chain A: M.149
- Chain B: A.99, A.100
2 PLIP interactions:2 interactions with chain B- Water bridges: B:A.100, B:W.103
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.16: 6 residues within 4Å:- Chain A: E.40, I.133, R.137, H.142, L.143, A.146
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.133, A:E.141
GOL.28: 6 residues within 4Å:- Chain B: E.40, I.133, R.137, H.142, L.143, A.146
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.133, B:E.141
- 2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
TAM.17: 9 residues within 4Å:- Chain A: T.64, G.65, Q.66, S.90, S.94, T.95, T.96
- Ligands: CL.13, CL.14
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:T.64, A:G.65, A:Q.66, A:Q.66, A:S.94, A:T.95, A:T.95, A:T.96, A:T.96
TAM.29: 6 residues within 4Å:- Chain B: T.64, G.65, Q.66, S.94, T.95, T.96
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:T.64, B:G.65, B:Q.66, B:T.95, B:T.95, B:T.96, B:T.96
- Water bridges: B:T.95
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wielens, J. et al., Parallel Screening of Low Molecular Weight Fragment Libraries: Do Differences in Methodology Affect Hit Identification?. J.Biomol.Screen (2013)
- Release Date
- 2012-12-19
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4ah9.1
Parallel screening of a low molecular weight compound library: do differences in methodology affect hit identification
INTEGRASE
Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nf9.1 | 3nfa.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 | 4ceo.1 more...less...4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1