- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.4: 4 residues within 4Å:- Chain A: G.65, S.94, T.95, T.96
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.65
- Water bridges: A:Q.66, A:T.95
DMS.11: 5 residues within 4Å:- Chain B: G.65, S.94, T.95, T.96
- Ligands: EDO.13
1 PLIP interactions:1 interactions with chain B- Water bridges: B:T.95
- 5 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 7 residues within 4Å:- Chain A: E.56, F.71, K.74, L.75, R.78
- Chain B: R.78
- Ligands: ACT.14
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.71, A:K.74, A:L.75
- Salt bridges: A:K.74, A:R.78, B:R.78
ACT.6: 3 residues within 4Å:- Chain A: Y.70, K.74
- Ligands: ACT.7
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Salt bridges: B:K.74, B:K.144, A:K.74
- Hydrogen bonds: A:Y.70
- Water bridges: A:Y.70
ACT.7: 3 residues within 4Å:- Chain B: Y.70, K.74
- Ligands: ACT.6
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:K.74, A:K.74
ACT.12: 9 residues within 4Å:- Chain A: G.77, R.78, W.79, P.80
- Chain B: Y.54, N.155, H.156, G.168
- Ligands: EDO.15
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:N.155, B:S.166
- Salt bridges: B:H.156
- Hydrophobic interactions: A:P.80
ACT.14: 7 residues within 4Å:- Chain A: R.78
- Chain B: E.56, F.71, K.74, L.75, R.78
- Ligands: ACT.5
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Salt bridges: A:R.78, B:K.74, B:R.78
- Hydrophobic interactions: B:F.71
- Hydrogen bonds: B:E.56
- 2 x RVN: 5-[(E)-(2-oxidanylidene-1H-indol-3-ylidene)methyl]-1,3-benzodioxole-4-carboxylic acid(Non-covalent)
RVN.8: 13 residues within 4Å:- Chain A: Q.139, A.140, E.141, H.142, K.144, T.145, M.149
- Chain B: Q.66, Y.70, L.73, T.96, A.100, W.103
11 PLIP interactions:5 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:L.73, B:T.96, B:A.100, B:W.103, A:T.145
- Hydrogen bonds: B:Q.66, A:E.141, A:H.142, A:H.142, A:T.145
- Salt bridges: A:H.142
RVN.16: 13 residues within 4Å:- Chain A: Q.66, Y.70, L.73, T.96, A.100, W.103
- Chain B: Q.139, A.140, E.141, H.142, K.144, T.145, M.149
10 PLIP interactions:4 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:E.141, B:H.142, B:T.145, A:Q.66
- Salt bridges: B:H.142
- Hydrophobic interactions: A:Q.66, A:L.73, A:T.96, A:A.100, A:W.103
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.13: 4 residues within 4Å:- Chain B: T.64, G.65, Q.66
- Ligands: DMS.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.65, B:Q.66
EDO.15: 8 residues within 4Å:- Chain A: R.78, W.79, P.80
- Chain B: W.79, G.168, E.169, V.172
- Ligands: ACT.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.78
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Interrogating HIV Integrase for Compounds that Bind- a Sampl Challenge. J.Comput.Aided Mol.Des. (2014)
- Release Date
- 2014-01-08
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4cjf.1
Interrogating HIV integrase for compounds that bind- a SAMPL challenge
INTEGRASE
Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nf9.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 more...less...4ceo.1 | 4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1