- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 3 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 6 residues within 4Å:- Chain A: E.56, A.57, F.71, K.74, L.75
- Chain B: R.78
7 PLIP interactions:1 interactions with chain B, 6 interactions with chain A- Salt bridges: B:R.78, A:K.74
- Hydrophobic interactions: A:F.71, A:K.74
- Hydrogen bonds: A:E.56, A:E.56, A:A.57
ACT.5: 8 residues within 4Å:- Chain A: Y.54, N.155, H.156, G.168
- Chain B: G.77, R.78, W.79, P.80
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:N.155
- Salt bridges: A:H.156
- Water bridges: B:V.81
ACT.15: 6 residues within 4Å:- Chain A: R.78
- Chain B: E.56, A.57, F.71, K.74, L.75
7 PLIP interactions:1 interactions with chain A, 6 interactions with chain B- Salt bridges: A:R.78, B:K.74
- Hydrophobic interactions: B:E.56, B:F.71, B:K.74
- Hydrogen bonds: B:E.56, B:A.57
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 4 residues within 4Å:- Chain A: H.38, V.43, A.62, E.63
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.63
EDO.7: 8 residues within 4Å:- Chain A: Q.66, E.67, Y.70
- Chain B: H.142, K.144, T.145
- Ligands: U2Z.11, SO4.14
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:H.142, B:T.145, B:T.145, A:Q.66, A:E.67
EDO.8: 3 residues within 4Å:- Chain A: T.64, G.65
- Ligands: GOL.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.65
- Water bridges: A:Q.66
EDO.9: 4 residues within 4Å:- Chain A: L.34, D.35, C.36, D.87
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.35, A:C.36, A:C.36
- Water bridges: A:D.87, A:N.126
EDO.16: 8 residues within 4Å:- Chain A: H.142, K.144, T.145
- Chain B: Q.66, E.67, Y.70
- Ligands: SO4.2, U2Z.20
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.66, B:E.67, A:T.145
EDO.17: 3 residues within 4Å:- Chain B: T.64, G.65
- Ligands: GOL.19
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.65
- Water bridges: B:Q.66
EDO.18: 7 residues within 4Å:- Chain A: G.77, R.78, P.80
- Chain B: Y.54, N.155, H.156, G.168
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.77
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 5 residues within 4Å:- Chain A: G.65, S.94, T.95, T.96
- Ligands: EDO.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.66, A:T.95, A:T.96
- Water bridges: A:G.65
GOL.19: 5 residues within 4Å:- Chain B: G.65, S.94, T.95, T.96
- Ligands: EDO.17
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.66, B:S.94, B:T.95
- 2 x U2Z: [1-[2-(aminomethyl)phenyl]-5-methyl-pyrazol-3-yl]methanol(Non-covalent)
U2Z.11: 12 residues within 4Å:- Chain A: Q.66, A.69, Y.70, L.73, A.99, A.100, W.103
- Chain B: Q.139, T.145, M.149
- Ligands: EDO.7, SO4.14
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.99
- pi-Stacking: A:W.103
U2Z.20: 12 residues within 4Å:- Chain A: Q.139, T.145, M.149
- Chain B: Q.66, A.69, Y.70, L.73, A.99, A.100, W.103
- Ligands: SO4.2, EDO.16
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:T.145
- Hydrophobic interactions: B:A.99
- pi-Stacking: B:W.103
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Interrogating HIV Integrase for Compounds that Bind- a Sampl Challenge. J.Comput.Aided Mol.Des. (2014)
- Release Date
- 2013-12-11
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4cho.1
Interrogating HIV integrase for compounds that bind- a SAMPL challenge
INTEGRASE
Toggle Identical (AB)Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nf9.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 more...less...4ceo.1 | 4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1