- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 7 x ACY: ACETIC ACID(Non-functional Binders)
ACY.3: 3 residues within 4Å:- Chain A: Y.70, K.74
- Ligands: ACY.15
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:Y.70
- Salt bridges: A:K.74, B:K.74
- Water bridges: B:V.59, B:Q.148
ACY.4: 8 residues within 4Å:- Chain A: N.155, H.156
- Chain B: A.76, G.77, R.78, W.79, P.80
- Ligands: ACY.6
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:N.155
- Salt bridges: A:H.156
- Water bridges: B:V.81
ACY.5: 5 residues within 4Å:- Chain A: E.56, F.71, K.74, L.75, R.78
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:K.74
- Hydrogen bonds: A:E.56
- Salt bridges: A:K.74, B:R.78
ACY.6: 7 residues within 4Å:- Chain A: W.79, G.168, V.172
- Chain B: R.78, W.79, P.80
- Ligands: ACY.4
No protein-ligand interaction detected (PLIP)ACY.7: 8 residues within 4Å:- Chain A: G.77, R.78, W.79, P.80
- Chain B: N.155, H.156, G.168
- Ligands: ACY.16
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:H.156, A:V.81
- Salt bridges: B:H.156
ACY.15: 3 residues within 4Å:- Chain B: Y.70, K.74
- Ligands: ACY.3
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Water bridges: A:V.59, A:Q.148
- Salt bridges: A:K.74, B:K.74
- Hydrophobic interactions: B:Y.70
- Hydrogen bonds: B:Y.70, B:Y.70
ACY.16: 8 residues within 4Å:- Chain A: R.78, W.79, P.80
- Chain B: Y.54, W.79, G.168, V.172
- Ligands: ACY.7
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.78
- Hydrophobic interactions: B:Y.54
- 2 x 1TD: 3-[(E)-(2-oxidanylidene-1H-indol-3-ylidene)methyl]benzoic acid(Non-covalent)
1TD.8: 10 residues within 4Å:- Chain A: A.140, E.141, H.142, T.145, M.149
- Chain B: Q.66, L.73, A.99, A.100, W.103
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:E.141, A:H.142, A:T.145
- Salt bridges: A:H.142
- Hydrophobic interactions: B:Q.66, B:L.73, B:A.100, B:W.103
- Water bridges: B:A.99
1TD.17: 10 residues within 4Å:- Chain A: Q.66, L.73, A.99, A.100, W.103
- Chain B: A.140, E.141, H.142, T.145, M.149
8 PLIP interactions:4 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.73, A:A.100, A:W.103
- Water bridges: A:A.99
- Hydrogen bonds: B:E.141, B:H.142, B:T.145
- Salt bridges: B:H.142
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Interrogating HIV integrase for compounds that bind--a SAMPL challenge. J. Comput. Aided Mol. Des. (2014)
- Release Date
- 2014-03-05
- Peptides
- Integrase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4ovl.1
Interrogating HIV integrase for compounds that bind- a SAMPL challenge
Integrase
Toggle Identical (AB)Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nf9.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 more...less...4ceo.1 | 4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1