- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACY: ACETIC ACID(Non-functional Binders)
ACY.4: 4 residues within 4Å:- Chain A: Y.70, K.74
- Chain B: E.58
- Ligands: ACY.5
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:Y.70, B:E.58
- Salt bridges: A:K.74, B:K.74, B:K.144
- Water bridges: B:E.58
ACY.5: 4 residues within 4Å:- Chain A: E.58
- Chain B: Y.70, K.74
- Ligands: ACY.4
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Water bridges: A:V.59, A:Q.148
- Salt bridges: A:K.74, A:K.144, B:K.74
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 6 residues within 4Å:- Chain A: Q.139, A.140, E.141, H.142, T.145
- Ligands: EDO.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.141, A:H.142, A:T.145
EDO.7: 5 residues within 4Å:- Chain A: M.149
- Chain B: L.73, A.100, W.103
- Ligands: EDO.6
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.99
- Water bridges: B:A.100, B:A.100
EDO.8: 5 residues within 4Å:- Chain A: S.28, I.31, T.83, K.107, E.109
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.28, A:T.83, A:K.107, A:E.109
EDO.14: 5 residues within 4Å:- Chain B: Q.139, E.141, H.142, T.145
- Ligands: EDO.15
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.141, B:H.142
EDO.15: 5 residues within 4Å:- Chain A: A.99, A.100
- Chain B: T.145, M.149
- Ligands: EDO.14
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.99
- Water bridges: A:A.100, A:A.100
- 2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
TAM.9: 6 residues within 4Å:- Chain A: T.64, G.65, Q.66, S.94, T.95, T.96
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:T.64, A:T.64, A:G.65, A:Q.66, A:T.95, A:T.95, A:T.95, A:T.96, A:T.96, A:T.96
TAM.16: 7 residues within 4Å:- Chain B: T.64, G.65, Q.66, S.90, S.94, T.95, T.96
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:T.64, B:G.65, B:Q.66, B:T.95, B:T.95, B:T.96, B:T.96
- 2 x Z5P: 1-[2-(1H-pyrazol-1-yl)phenyl]methanamine(Non-covalent)
Z5P.10: 12 residues within 4Å:- Chain A: Y.54, N.155, H.156, G.168, E.169, V.172
- Chain B: G.77, R.78, W.79, P.80, I.175, I.179
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:Y.54, A:N.155, A:E.169, B:P.80, B:I.175, B:I.179
- Hydrogen bonds: A:G.168
Z5P.17: 11 residues within 4Å:- Chain A: G.77, R.78, W.79, P.80, I.179
- Chain B: Y.54, N.155, H.156, G.168, E.169, V.172
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:Y.54, B:N.155, B:E.169, A:P.80, A:I.179
- Hydrogen bonds: B:G.168
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wielens, J. et al., Parallel Screening of Low Molecular Weight Fragment Libraries: Do Differences in Methodology Affect Hit Identification?. J.Biomol.Screen (2013)
- Release Date
- 2012-12-19
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4ahv.1
Parallel screening of a low molecular weight compound library: do differences in methodology affect hit identification
INTEGRASE
Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nf9.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 | 4ceo.1 more...less...4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1