- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x 5EY: (3R)-3-(3-hydroxy-3-oxopropyl)-6-[(E)-[(2R)-2-oxidanyl-2,3-dihydroinden-1-ylidene]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid(Non-covalent)
5EY.5: 15 residues within 4Å:- Chain A: Q.139, A.140, E.141, H.142, K.144, T.145, M.149
- Chain B: Q.66, Y.70, L.73, T.96, A.100, W.103
- Ligands: SO4.2, EE2.6
15 PLIP interactions:11 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:H.142, A:K.144, A:K.144, A:T.145, B:L.73, B:T.96, B:A.100, B:W.103
- Hydrogen bonds: A:E.141, A:H.142, A:T.145
- Water bridges: A:L.143
- Salt bridges: A:H.142, A:H.142, A:K.144
5EY.11: 14 residues within 4Å:- Chain A: Q.66, Y.70, L.73, T.96, A.100, W.103
- Chain B: Q.139, A.140, E.141, H.142, K.144, T.145, M.149
- Ligands: EE2.12
14 PLIP interactions:10 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:H.142, B:K.144, B:T.145, A:L.73, A:T.96, A:A.100, A:W.103
- Hydrogen bonds: B:E.141, B:H.142, B:T.145, B:T.145
- Salt bridges: B:H.142, B:H.142, B:K.144
- 2 x EE2: (2R)-2-(3-hydroxy-3-oxopropyl)-6-[(E)-[(2S)-2-oxidanyl-2,3-dihydroinden-1-ylidene]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid(Non-covalent)
EE2.6: 16 residues within 4Å:- Chain A: Q.139, A.140, E.141, H.142, K.144, T.145, M.149
- Chain B: Q.66, E.67, A.69, Y.70, L.73, T.96, A.100, W.103
- Ligands: 5EY.5
12 PLIP interactions:6 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:T.145, B:Q.66, B:Y.70, B:L.73, B:T.96, B:A.100, B:W.103
- Hydrogen bonds: A:E.141, A:H.142, A:T.145
- Salt bridges: A:H.142, A:K.144
EE2.12: 16 residues within 4Å:- Chain A: Q.66, E.67, A.69, Y.70, L.73, T.96, A.100, W.103
- Chain B: Q.139, A.140, E.141, H.142, K.144, T.145, M.149
- Ligands: 5EY.11
13 PLIP interactions:7 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:T.145, A:Q.66, A:L.73, A:T.96, A:A.100, A:W.103
- Hydrogen bonds: B:E.141, B:H.142, B:T.145, B:T.145
- Salt bridges: B:H.142, B:K.144
- Water bridges: A:E.67
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Interrogating HIV Integrase for Compounds that Bind- a Sampl Challenge. J.Comput.Aided Mol.Des. (2014)
- Release Date
- 2013-11-27
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4cf9.1
Interrogating HIV integrase for compounds that bind- a SAMPL challenge
INTEGRASE
Toggle Identical (AB)Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nf9.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 more...less...4ceo.1 | 4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1