- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 5 x ACY: ACETIC ACID(Non-functional Binders)
ACY.3: 6 residues within 4Å:- Chain A: E.56, A.57, F.71, K.74, L.75
- Chain B: R.78
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain A- Salt bridges: B:R.78, A:K.74
- Hydrophobic interactions: A:E.56, A:F.71
- Hydrogen bonds: A:A.57
ACY.4: 7 residues within 4Å:- Chain A: N.155, H.156
- Chain B: A.76, G.77, R.78, W.79, P.80
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:P.80
- Hydrogen bonds: B:W.79
- Salt bridges: A:H.156
ACY.11: 6 residues within 4Å:- Chain A: R.78
- Chain B: E.56, A.57, F.71, K.74, L.75
8 PLIP interactions:1 interactions with chain A, 7 interactions with chain B- Salt bridges: A:R.78, B:K.74
- Hydrophobic interactions: B:E.56, B:F.71, B:K.74
- Hydrogen bonds: B:E.56, B:E.56, B:A.57
ACY.12: 9 residues within 4Å:- Chain A: A.76, G.77, R.78, W.79, P.80
- Chain B: N.155, H.156, G.168
- Ligands: ACY.13
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:N.155
- Salt bridges: B:H.156
- Hydrogen bonds: A:G.77
ACY.13: 8 residues within 4Å:- Chain A: R.78, W.79, P.80
- Chain B: Y.54, W.79, G.168, V.172
- Ligands: ACY.12
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.78
- Hydrophobic interactions: B:Y.54
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 5 residues within 4Å:- Chain A: G.65, S.94, T.95, T.96
- Ligands: EDO.5
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.65, A:T.95, A:T.95, A:T.96, A:T.96, A:T.96
GOL.16: 4 residues within 4Å:- Chain B: G.65, S.94, T.95, T.96
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.65, B:T.95, B:T.96, B:T.96
- Water bridges: B:Q.66
- 2 x V7H: (2S)-2-(3-hydroxy-3-oxopropyl)-6-[[[2-[(phenylmethyl)carbamoyl]phenyl]methylamino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid(Non-covalent)
V7H.8: 14 residues within 4Å:- Chain A: D.138, Q.139, A.140, E.141, H.142, T.145, M.149
- Chain B: Q.66, E.67, Y.70, T.96, A.99, A.100, W.103
16 PLIP interactions:8 interactions with chain B, 8 interactions with chain A- Hydrophobic interactions: B:Q.66, B:Y.70, B:Y.70, B:A.99, B:A.100, B:W.103, A:T.145
- Water bridges: B:T.64, B:Q.66, A:E.141
- Hydrogen bonds: A:Q.139, A:E.141, A:H.142, A:H.142, A:T.145
- Salt bridges: A:H.142
V7H.17: 15 residues within 4Å:- Chain A: Q.66, E.67, Y.70, T.96, A.99, A.100, W.103
- Chain B: D.138, Q.139, A.140, E.141, H.142, K.144, T.145, M.149
14 PLIP interactions:7 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:T.145, A:Q.66, A:Y.70, A:Y.70, A:A.99, A:A.100, A:W.103
- Hydrogen bonds: B:Q.139, B:E.141, B:H.142, B:T.145, B:T.145
- Salt bridges: B:H.142
- Water bridges: A:Q.66
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Interrogating HIV Integrase for Compounds that Bind- a Sampl Challenge. J.Comput.Aided Mol.Des. (2014)
- Release Date
- 2013-12-11
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4cf8.1
Interrogating HIV integrase for compounds that bind- a SAMPL challenge
INTEGRASE
Toggle Identical (AB)Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nf9.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 more...less...4ceo.1 | 4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1