- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACY: ACETIC ACID(Non-functional Binders)
ACY.4: 3 residues within 4Å:- Chain A: Y.70, K.74
- Ligands: ACY.5
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:Y.70
- Hydrogen bonds: A:Y.70, A:Y.70
- Salt bridges: A:K.74, B:K.74, B:K.144
- Water bridges: B:Q.148
ACY.5: 3 residues within 4Å:- Chain B: Y.70, K.74
- Ligands: ACY.4
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:Y.70
- Salt bridges: B:K.74, A:K.74, A:K.144
- Water bridges: A:V.59, A:Q.148
ACY.6: 5 residues within 4Å:- Chain A: Q.66, E.67, Y.70
- Chain B: K.144
- Ligands: C5Q.9
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:K.144
- Hydrophobic interactions: A:Q.66
ACY.13: 5 residues within 4Å:- Chain A: K.144
- Chain B: Q.66, E.67, Y.70
- Ligands: C5Q.14
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.70
- Salt bridges: A:K.144
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x C5Q: 5-(1H-indol-3-ylmethyl)-1,3-benzodioxole-4-carboxylic acid(Non-covalent)
C5Q.8: 10 residues within 4Å:- Chain A: H.156, R.158, S.166, G.168, E.169
- Chain B: A.76, G.77, R.78, W.79, P.80
9 PLIP interactions:2 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:P.80, B:P.80, A:E.169
- Hydrogen bonds: A:R.158, A:S.166, A:S.166
- Salt bridges: A:H.156, A:R.158
- pi-Stacking: A:H.156
C5Q.9: 13 residues within 4Å:- Chain A: Q.66, A.69, Y.70, L.73, T.96, A.99, A.100, W.102, W.103
- Chain B: Q.139, T.145, M.149
- Ligands: ACY.6
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:T.145, A:L.73, A:A.100, A:W.102
- Hydrogen bonds: B:Q.139
- pi-Stacking: A:W.103, A:W.103
C5Q.14: 13 residues within 4Å:- Chain A: Q.139, T.145, M.149
- Chain B: Q.66, A.69, Y.70, L.73, T.96, A.99, A.100, W.102, W.103
- Ligands: ACY.13
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.73, B:A.100, B:W.102, A:T.145
- Hydrogen bonds: B:Q.66, A:Q.139
- pi-Stacking: B:W.103, B:W.103
C5Q.15: 13 residues within 4Å:- Chain A: A.76, G.77, R.78, W.79, P.80, I.175, D.178, I.179
- Chain B: H.156, R.158, S.166, G.168, E.169
11 PLIP interactions:6 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:S.166, B:S.166
- Water bridges: B:R.158, B:R.158
- Salt bridges: B:H.156, B:R.158
- Hydrophobic interactions: A:P.80, A:P.80, A:P.80, A:I.175, A:I.179
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Peat, T.S. et al., Interrogating HIV Integrase for Compounds that Bind- a Sampl Challenge. J.Comput.Aided Mol.Des. (2014)
- Release Date
- 2013-12-18
- Peptides
- INTEGRASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4chy.1
Interrogating HIV integrase for compounds that bind- a SAMPL challenge
INTEGRASE
Toggle Identical (AB)Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf8.1 | 3nf9.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 more...less...4ceo.1 | 4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1