SMTL ID : 4iki.1

Crystal structure of wild-type human transthyretin in complex with indomethacin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x IMN: INDOMETHACIN(Non-covalent)

IMN.1: 15 residues within 4Å: Chain A: K.15, L.17, A.108 Chain C: K.15, L.17, E.54, T.106, A.108, A.109, L.110, S.117, T.118, T.119, V.121 Ligands: IMN.3 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain C Hydrophobic interactions: A:L.17, C:K.15, C:A.108, C:L.110, C:V.121 Hydrogen bonds: C:E.54 Salt bridges: C:K.15 IMN.2: 16 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, T.106, A.108, L.110, T.119, V.121 Ligands: IMN.4 12 PLIP interactions: 4 interactions with chain B, 8 interactions with chain D Hydrophobic interactions: B:L.17, B:A.108, B:L.110, D:K.15, D:L.17, D:T.106, D:A.108, D:L.110, D:V.121 Salt bridges: B:K.15 Hydrogen bonds: D:T.106 Water bridges: D:T.119 IMN.3: 15 residues within 4Å: Chain A: K.15, L.17, E.54, T.106, A.108, A.109, L.110, S.117, T.118, T.119, V.121 Chain C: K.15, L.17, A.108 Ligands: IMN.1 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:K.15, A:A.108, A:L.110, A:V.121, C:L.17 Hydrogen bonds: A:E.54 Salt bridges: A:K.15 IMN.4: 16 residues within 4Å: Chain B: K.15, L.17, T.106, A.108, L.110, T.119, V.121 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: IMN.2 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:K.15, B:L.17, B:T.106, B:A.108, B:L.110, B:V.121, D:L.17, D:A.108, D:L.110 Hydrogen bonds: B:T.106 Water bridges: B:T.119 Salt bridges: D:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lima, L.M.T.R. et al., Crystal structure of wild-type human transthyretin in complex with indomethacin. To be Published

Release Date

2013-01-30

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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