SMTL ID : 4ikk.1

Crystal structure of wild-type human transthyretin in complex with sulindac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x SUZ: [(1Z)-5-fluoro-2-methyl-1-{4-[methylsulfinyl]benzylidene}-1H-inden-3-yl]acetic acid(Non-covalent)

SUZ.1: 19 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Chain B: S.115 Chain C: K.15, V.16, L.17, A.108, A.109, L.110, S.117, T.119 Ligands: SUZ.2, SUZ.3, SUZ.4 21 PLIP interactions: 10 interactions with chain A, 10 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: A:K.15, A:K.15, A:L.17, A:L.17, A:A.108, A:L.110, A:L.110, C:K.15, C:L.17, C:A.108, C:A.108, C:L.110 Hydrogen bonds: A:S.117, C:S.117, B:S.115 Water bridges: A:K.15, C:K.15, C:K.15 Salt bridges: A:K.15, C:K.15 Halogen bonds: C:K.15 SUZ.2: 19 residues within 4Å: Chain A: S.115 Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Chain D: K.15, V.16, L.17, A.108, A.109, L.110, S.117, T.119 Ligands: SUZ.1, SUZ.3, SUZ.4 13 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: B:K.15, B:K.15, B:L.17, B:L.17, B:A.108, B:L.110, B:L.110, D:L.17, D:L.110 Hydrogen bonds: B:S.117, A:S.115 Salt bridges: B:K.15 Halogen bonds: D:K.15 SUZ.3: 19 residues within 4Å: Chain A: K.15, V.16, L.17, A.108, A.109, L.110, S.117, T.119 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Chain D: S.115 Ligands: SUZ.1, SUZ.2, SUZ.4 21 PLIP interactions: 10 interactions with chain A, 10 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: A:K.15, A:L.17, A:A.108, A:A.108, A:L.110, C:K.15, C:K.15, C:L.17, C:L.17, C:A.108, C:L.110, C:L.110 Hydrogen bonds: A:S.117, C:S.117, D:S.115 Water bridges: A:K.15, A:K.15, C:K.15 Salt bridges: A:K.15, C:K.15 Halogen bonds: A:K.15 SUZ.4: 19 residues within 4Å: Chain B: K.15, V.16, L.17, A.108, A.109, L.110, S.117, T.119 Chain C: S.115 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Ligands: SUZ.1, SUZ.2, SUZ.3 13 PLIP interactions: 9 interactions with chain D, 3 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: D:K.15, D:K.15, D:L.17, D:L.17, D:A.108, D:L.110, D:L.110, B:L.17, B:L.110 Hydrogen bonds: D:S.117, C:S.115 Salt bridges: D:K.15 Halogen bonds: B:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lima, L.M.T.R., Crystal structure of wild-type human transthyretin in complex with sulindac. To be Published

Release Date

2013-01-30

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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