SMTL ID : 4l1t.1

Transthyretin in complex with (E)-3-(dimethylamino)-5-(4-hydroxy-3,5-dimethylstyryl)benzoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

homo-tetramer

Ligands

4 x 1WZ: 3-(dimethylamino)-5-[(E)-2-(4-hydroxy-3,5-dimethylphenyl)ethenyl]benzoic acid(Non-covalent)

1WZ.1: 16 residues within 4Å: Chain A: M.13, K.15, L.17, L.110, S.117, T.118, T.119 Chain C: K.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119 Ligands: 1WZ.3 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.17, C:A.108, C:L.110, A:K.15, A:L.17, A:L.110 Hydrogen bonds: C:S.117, C:S.117, A:S.117 Water bridges: C:K.15 Salt bridges: C:K.15 1WZ.2: 16 residues within 4Å: Chain B: L.17, T.106, A.108, L.110, S.117, T.118, T.119 Chain D: M.13, K.15, L.17, L.110, S.117, T.118, T.119, V.121 Ligands: 1WZ.4 13 PLIP interactions: 7 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: B:L.17, B:A.108, B:L.110, B:L.110, D:L.17 Hydrogen bonds: B:S.117, D:S.117, D:S.117 Water bridges: B:T.106, B:T.106, D:K.15, D:K.15 Salt bridges: D:K.15 1WZ.3: 16 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119 Chain C: M.13, K.15, L.17, L.110, S.117, T.118, T.119 Ligands: 1WZ.1 11 PLIP interactions: 4 interactions with chain C, 7 interactions with chain A Hydrophobic interactions: C:K.15, C:L.17, C:L.110, A:L.17, A:A.108, A:L.110 Hydrogen bonds: C:S.117, A:S.117, A:S.117 Water bridges: A:K.15 Salt bridges: A:K.15 1WZ.4: 16 residues within 4Å: Chain B: M.13, K.15, L.17, L.110, S.117, T.118, T.119, V.121 Chain D: L.17, T.106, A.108, L.110, S.117, T.118, T.119 Ligands: 1WZ.2 13 PLIP interactions: 7 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:L.17, D:A.108, D:L.110, D:L.110, B:L.17 Hydrogen bonds: D:S.117, B:S.117, B:S.117 Water bridges: D:T.106, D:T.106, B:K.15, B:K.15 Salt bridges: B:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baranczak, A. et al., Fluorogenic small molecules requiring reaction with a specific protein to create a fluorescent conjugate for biological imaging-what we know and what we need to learn. Biopolymers (2014)

Release Date

2013-10-02

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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