SMTL ID : 4qrq.1

Crystal Structure of HLA B*0801 in complex with HSKKKCDEL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x HIS- SER- LYS- LYS- LYS- CYS- ASP- GLU- LEU: NS3-4A protein(Non-covalent)

HIS-SER-LYS-LYS-LYS-CYS-ASP-GLU-LEU.1: 29 residues within 4Å: Chain A: M.5, Y.7, D.9, Y.59, R.62, N.63, I.66, F.67, N.70, T.73, D.74, E.76, S.77, N.80, Y.84, L.95, S.97, Y.99, N.114, Y.116, Y.123, T.143, W.147, V.152, Q.155, D.156, Y.159, W.167, Y.171 42 PLIP interactions: 42 interactions with chain A Hydrophobic interactions: A:I.66, A:N.70, A:E.76, A:L.95, A:Y.99, A:Y.116, A:Y.123, A:T.143, A:W.147, A:V.152, A:Y.159, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:R.62, A:N.63, A:N.63, A:N.70, A:N.70, A:S.77, A:N.80, A:N.80, A:S.97, A:S.97, A:Y.99, A:Y.99, A:N.114, A:T.143, A:D.156, A:Y.159, A:Y.171 Water bridges: A:Y.7, A:E.76, A:E.76, A:E.76, A:Y.84, A:Y.116, A:Y.116, A:K.146, A:Q.155, A:Q.155 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nivarthi, U.K. et al., An Extensive Antigenic Footprint Underpins Immunodominant TCR Adaptability against a Hypervariable Viral Determinant. J.Immunol. (2014)

Release Date

2014-11-12

Peptides

HLA class I histocompatibility antigen, B-8 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-8 alpha chain

Beta-2-microglobulin

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