SMTL ID : 4qrt.1

Crystal Structure of HLA B*0801 in complex with ELN_YYM, ELNRKMIYM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- LEU- ASN- ARG- LYS- MET- ILE- TYR- MET: Major immediate-early protein(Non-covalent)

GLU-LEU-ASN-ARG-LYS-MET-ILE-TYR-MET.1: 33 residues within 4Å: Chain A: Y.7, D.9, S.24, F.36, Y.59, R.62, N.63, I.66, F.67, T.69, N.70, T.73, D.74, E.76, S.77, N.80, L.81, Y.84, L.95, S.97, Y.99, Y.116, Y.123, T.143, K.146, W.147, A.150, V.152, D.156, Y.159, T.163, W.167, Y.171 37 PLIP interactions: 37 interactions with chain A Hydrophobic interactions: A:Y.7, A:F.36, A:I.66, A:F.67, A:T.73, A:E.76, A:E.76, A:L.81, A:Y.99, A:A.150, A:V.152, A:Y.159, A:T.163, A:W.167 Hydrogen bonds: A:Y.7, A:D.9, A:N.63, A:N.63, A:N.70, A:N.70, A:T.73, A:S.77, A:N.80, A:Y.84, A:S.97, A:S.97, A:Y.99, A:Y.116, A:D.156, A:Y.171 Water bridges: A:Y.7, A:Y.7, A:I.66, A:D.156, A:D.156 Salt bridges: A:R.62, A:K.146

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: L.109, L.110 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, C. et al., Molecular imprint of exposure to naturally occurring genetic variants of human cytomegalovirus on the T cell repertoire. Sci Rep (2014)

Release Date

2014-07-16

Peptides

HLA class I histocompatibility antigen, B-8 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-8 alpha chain

Beta-2-microglobulin

Related Entries With Identical Sequence