SMTL ID : 4u0f.1

Hexameric HIV-1 CA in Complex with BI-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-hexamer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: N.74, A.77, S.102, A.105, T.107 Ligands: 3A8.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.107, A:T.107 EDO.3: 6 residues within 4Å: Chain B: N.74, A.77, S.102, A.105, T.107 Ligands: 3A8.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.107, B:T.107 EDO.5: 6 residues within 4Å: Chain C: N.74, A.77, S.102, A.105, T.107 Ligands: 3A8.6 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.107, C:T.107 EDO.7: 6 residues within 4Å: Chain D: N.74, A.77, S.102, A.105, T.107 Ligands: 3A8.8 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.107, D:T.107 EDO.9: 6 residues within 4Å: Chain E: N.74, A.77, S.102, A.105, T.107 Ligands: 3A8.10 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.107, E:T.107 EDO.11: 6 residues within 4Å: Chain F: N.74, A.77, S.102, A.105, T.107 Ligands: 3A8.12 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:T.107, F:T.107

6 x 3A8: (4S)-4-(4-hydroxyphenyl)-3-phenyl-4,5-dihydropyrrolo[3,4-c]pyrazol-6(1H)-one(Non-covalent)

3A8.2: 13 residues within 4Å: Chain A: N.53, L.56, N.57, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Ligands: EDO.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.56, A:L.56, A:L.69, A:K.70, A:I.73, A:I.73 Hydrogen bonds: A:N.53, A:N.57, A:N.74, A:N.74, A:T.107 3A8.4: 13 residues within 4Å: Chain B: N.53, L.56, N.57, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Ligands: EDO.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.56, B:L.56, B:L.69, B:K.70, B:I.73, B:I.73 Hydrogen bonds: B:N.53, B:N.57, B:N.74, B:N.74, B:T.107 3A8.6: 13 residues within 4Å: Chain C: N.53, L.56, N.57, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Ligands: EDO.5 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:L.56, C:L.56, C:L.69, C:K.70, C:I.73, C:I.73 Hydrogen bonds: C:N.53, C:N.57, C:N.74, C:N.74, C:T.107 3A8.8: 13 residues within 4Å: Chain D: N.53, L.56, N.57, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Ligands: EDO.7 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:L.56, D:L.56, D:L.69, D:K.70, D:I.73, D:I.73 Hydrogen bonds: D:N.53, D:N.57, D:N.74, D:N.74, D:T.107 3A8.10: 13 residues within 4Å: Chain E: N.53, L.56, N.57, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Ligands: EDO.9 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:L.56, E:L.56, E:L.69, E:K.70, E:I.73, E:I.73 Hydrogen bonds: E:N.53, E:N.57, E:N.74, E:N.74, E:T.107 3A8.12: 13 residues within 4Å: Chain F: N.53, L.56, N.57, M.66, L.69, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 Ligands: EDO.11 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:L.56, F:L.56, F:L.69, F:K.70, F:I.73, F:I.73 Hydrogen bonds: F:N.53, F:N.57, F:N.74, F:N.74, F:T.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Price, A.J. et al., Host Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly. Plos Pathog. (2014)

Release Date

2014-11-12

Peptides

Capsid protein p24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Capsid protein p24

Related Entries With Identical Sequence