SMTL ID : 8qv1.1

Hexameric HIV-1 CA in complex with DDD01728505

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

6 x X0H: methyl 2-(2-oxidanylidene-1~{H}-quinolin-4-yl)ethanoate(Non-covalent)

X0H.1: 9 residues within 4Å: Chain A: N.53, L.56, N.57, M.66, K.70, I.73, N.74, T.107, Y.130 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.56, A:K.70, A:I.73 Hydrogen bonds: A:N.57, A:N.57 Water bridges: A:N.53, A:N.74 pi-Cation interactions: A:K.70 X0H.2: 9 residues within 4Å: Chain B: N.53, L.56, N.57, M.66, K.70, I.73, N.74, T.107, Y.130 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.56, B:K.70, B:I.73 Hydrogen bonds: B:N.57, B:N.57 Water bridges: B:N.53, B:N.74 pi-Cation interactions: B:K.70 X0H.3: 9 residues within 4Å: Chain C: N.53, L.56, N.57, M.66, K.70, I.73, N.74, T.107, Y.130 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:L.56, C:K.70, C:I.73 Hydrogen bonds: C:N.57, C:N.57 Water bridges: C:N.53, C:N.74 pi-Cation interactions: C:K.70 X0H.4: 9 residues within 4Å: Chain D: N.53, L.56, N.57, M.66, K.70, I.73, N.74, T.107, Y.130 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:L.56, D:K.70, D:I.73 Hydrogen bonds: D:N.57, D:N.57 Water bridges: D:N.53, D:N.74 pi-Cation interactions: D:K.70 X0H.5: 9 residues within 4Å: Chain E: N.53, L.56, N.57, M.66, K.70, I.73, N.74, T.107, Y.130 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:L.56, E:K.70, E:I.73 Hydrogen bonds: E:N.57, E:N.57 Water bridges: E:N.53, E:N.74 pi-Cation interactions: E:K.70 X0H.6: 9 residues within 4Å: Chain F: N.53, L.56, N.57, M.66, K.70, I.73, N.74, T.107, Y.130 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:L.56, F:K.70, F:I.73 Hydrogen bonds: F:N.57, F:N.57 Water bridges: F:N.53, F:N.74 pi-Cation interactions: F:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lang, S. et al., Application of an NMR/Crystallography Fragment Screening Platform for the Assessment and Rapid Discovery of New HIV-CA Binding Fragments. Chemmedchem (2024)

Release Date

2024-03-27

Peptides

Spacer peptide 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Spacer peptide 1

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