SMTL ID : 7snq.2 (1 other biounit)

Hexamer HIV-1 CA in complex with CPSF6 peptide and IP6 ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-6-6-mer

Ligands

2 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 9 residues within 4Å: Chain A: R.18, N.21, K.25 Chain B: R.18, N.21 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 12 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C, 1 interactions with chain F, 3 interactions with chain B, 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: A:R.18, A:N.21, C:R.18, F:R.18, B:R.18, B:N.21 Salt bridges: A:K.25, A:K.25, C:R.18, B:R.18, D:R.18, E:R.18 IHP.3: 3 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain E: R.18 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 interactions with chain E Salt bridges: A:R.18, B:R.18, E:R.18, E:R.18

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: H.12 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, G. et al., Prion-like low complexity regions enable avid virus-host interactions during HIV-1 infection. Nat Commun (2022)

Release Date

2022-09-07

Peptides

Capsid protein p24: ABCDEF
Cleavage and polyadenylation specificity factor subunit 6: GHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

G
S

H
T

I
U

J
V

K
W

L
X

Capsid protein p24

Cleavage and polyadenylation specificity factor subunit 6

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