SMTL ID : 6bhs.1

HIV-1 CA hexamer in complex with IP6, hexagonal crystal form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-hexamer

Ligands

6 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 12 residues within 4Å: Chain A: R.18 Chain B: S.16, R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: IHP.2, IHP.3, IHP.4, IHP.5, IHP.6 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D Salt bridges: B:R.18, F:R.18, E:R.18, A:R.18, C:R.18, D:R.18 IHP.2: 12 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: S.16, R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: IHP.1, IHP.3, IHP.4, IHP.5, IHP.6 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D Salt bridges: B:R.18, F:R.18, E:R.18, A:R.18, C:R.18, D:R.18 IHP.3: 12 residues within 4Å: Chain A: S.16, R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: IHP.1, IHP.2, IHP.4, IHP.5, IHP.6 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D Salt bridges: B:R.18, F:R.18, E:R.18, A:R.18, C:R.18, D:R.18 IHP.4: 12 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: S.16, R.18 Chain F: R.18 Ligands: IHP.1, IHP.2, IHP.3, IHP.5, IHP.6 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D Salt bridges: B:R.18, F:R.18, E:R.18, A:R.18, C:R.18, D:R.18 IHP.5: 12 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: S.16, R.18 Ligands: IHP.1, IHP.2, IHP.3, IHP.4, IHP.6 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D Salt bridges: B:R.18, F:R.18, E:R.18, A:R.18, C:R.18, D:R.18 IHP.6: 12 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: S.16, R.18 Chain E: R.18 Chain F: R.18 Ligands: IHP.1, IHP.2, IHP.3, IHP.4, IHP.5 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D Salt bridges: B:R.18, F:R.18, E:R.18, A:R.18, C:R.18, D:R.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dick, R.A. et al., Inositol phosphates are assembly co-factors for HIV-1. Nature (2018)

Release Date

2018-08-01

Peptides

Capsid protein p24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Capsid protein p24

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