SMTL ID : 8qui.1

Hexameric HIV-1 CA in complex with DDD00024969

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-hexamer

Ligands

6 x XXL: ethyl (3-oxo-2,3-dihydro-4H-1,4-benzoxazin-4-yl)acetate(Non-covalent)

XXL.1: 10 residues within 4Å: Chain A: N.53, N.57, M.66, L.69, K.70, I.73, N.74, A.105, T.107, Y.130 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.69, A:K.70, A:I.73 Hydrogen bonds: A:N.57 Water bridges: A:K.70 XXL.2: 10 residues within 4Å: Chain B: N.53, N.57, M.66, L.69, K.70, I.73, N.74, A.105, T.107, Y.130 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.69, B:K.70, B:I.73 Hydrogen bonds: B:N.57 Water bridges: B:K.70 XXL.3: 10 residues within 4Å: Chain C: N.53, N.57, M.66, L.69, K.70, I.73, N.74, A.105, T.107, Y.130 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.69, C:K.70, C:I.73 Hydrogen bonds: C:N.57 Water bridges: C:K.70 XXL.4: 10 residues within 4Å: Chain D: N.53, N.57, M.66, L.69, K.70, I.73, N.74, A.105, T.107, Y.130 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.69, D:K.70, D:I.73 Hydrogen bonds: D:N.57 Water bridges: D:K.70 XXL.5: 10 residues within 4Å: Chain E: N.53, N.57, M.66, L.69, K.70, I.73, N.74, A.105, T.107, Y.130 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:L.69, E:K.70, E:I.73 Hydrogen bonds: E:N.57 Water bridges: E:K.70 XXL.6: 10 residues within 4Å: Chain F: N.53, N.57, M.66, L.69, K.70, I.73, N.74, A.105, T.107, Y.130 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:L.69, F:K.70, F:I.73 Hydrogen bonds: F:N.57 Water bridges: F:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lang, S. et al., Application of an NMR/crystallography fragment screening platform for the assessment and rapid discovery of new HIV-CA binding fragments. Chemmedchem (2024)

Release Date

2024-03-27

Peptides

Spacer peptide 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Spacer peptide 1

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