SMTL ID : 6pu1.1

Cysteine stabilized hexameric HIV-1 CA in complex with SEC24C peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

hetero-6-6-mer

Ligands

18 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: K.170, R.173 Chain K: G.60, G.61 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: A.92 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: R.162, Q.219 Chain K: M.144 Ligand excluded by PLIP IOD.7: 4 residues within 4Å: Chain C: K.170, R.173 Chain G: G.60, G.61 Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain C: A.92 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain C: R.162, Q.219 Chain G: M.144 Ligand excluded by PLIP IOD.13: 4 residues within 4Å: Chain E: K.170, R.173 Chain I: G.60, G.61 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain E: A.92 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain E: R.162, Q.219 Chain I: M.144 Ligand excluded by PLIP IOD.19: 4 residues within 4Å: Chain E: G.60, G.61 Chain G: K.170, R.173 Ligand excluded by PLIP IOD.20: 1 residues within 4Å: Chain G: A.92 Ligand excluded by PLIP IOD.23: 3 residues within 4Å: Chain E: M.144 Chain G: R.162, Q.219 Ligand excluded by PLIP IOD.25: 4 residues within 4Å: Chain A: G.60, G.61 Chain I: K.170, R.173 Ligand excluded by PLIP IOD.26: 1 residues within 4Å: Chain I: A.92 Ligand excluded by PLIP IOD.29: 3 residues within 4Å: Chain A: M.144 Chain I: R.162, Q.219 Ligand excluded by PLIP IOD.31: 4 residues within 4Å: Chain C: G.60, G.61 Chain K: K.170, R.173 Ligand excluded by PLIP IOD.32: 1 residues within 4Å: Chain K: A.92 Ligand excluded by PLIP IOD.35: 3 residues within 4Å: Chain C: M.144 Chain K: R.162, Q.219 Ligand excluded by PLIP

18 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: I.153, R.167 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: M.96, R.97 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: V.27, G.60, H.62 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: I.153, R.167 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain C: M.96, R.97 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain C: V.27, G.60, H.62 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain E: I.153, R.167 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain E: M.96, R.97 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain E: V.27, G.60, H.62 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain G: I.153, R.167 Ligand excluded by PLIP CL.22: 2 residues within 4Å: Chain G: M.96, R.97 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain G: V.27, G.60, H.62 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain I: I.153, R.167 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain I: M.96, R.97 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain I: V.27, G.60, H.62 Ligand excluded by PLIP CL.33: 2 residues within 4Å: Chain K: I.153, R.167 Ligand excluded by PLIP CL.34: 2 residues within 4Å: Chain K: M.96, R.97 Ligand excluded by PLIP CL.36: 3 residues within 4Å: Chain K: V.27, G.60, H.62 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lindenberger, J.J. et al., Cysteine stabilized hexameric HIV-1 CA in complex with SEC24C peptide. To Be Published

Release Date

2021-01-06

Peptides

Gag polyprotein: ACEGIK
Protein transport protein Sec24C: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
B

D
B

F
B

H
B

J
B

L
B

Gag polyprotein

Protein transport protein Sec24C

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