SMTL ID : 5hgm.1

Hexameric HIV-1 CA in complex with dATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-hexamer

Ligands

6 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)

DTP.1: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: DTP.2, DTP.3, DTP.4, DTP.5, DTP.6 12 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D, 2 interactions with chain E, 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain F Salt bridges: C:R.18, C:R.18, D:R.18, D:R.18, E:R.18, E:R.18, B:R.18, B:R.18, A:R.18, A:R.18, F:R.18, F:R.18 DTP.2: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: DTP.1, DTP.3, DTP.4, DTP.5, DTP.6 12 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D, 2 interactions with chain E, 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain F Salt bridges: C:R.18, C:R.18, D:R.18, D:R.18, E:R.18, E:R.18, B:R.18, B:R.18, A:R.18, A:R.18, F:R.18, F:R.18 DTP.3: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: DTP.1, DTP.2, DTP.4, DTP.5, DTP.6 12 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D, 2 interactions with chain E, 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain F Salt bridges: C:R.18, C:R.18, D:R.18, D:R.18, E:R.18, E:R.18, B:R.18, B:R.18, A:R.18, A:R.18, F:R.18, F:R.18 DTP.4: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: DTP.1, DTP.2, DTP.3, DTP.5, DTP.6 12 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D, 2 interactions with chain E, 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain F Salt bridges: C:R.18, C:R.18, D:R.18, D:R.18, E:R.18, E:R.18, B:R.18, B:R.18, A:R.18, A:R.18, F:R.18, F:R.18 DTP.5: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: DTP.1, DTP.2, DTP.3, DTP.4, DTP.6 12 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D, 2 interactions with chain E, 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain F Salt bridges: C:R.18, C:R.18, D:R.18, D:R.18, E:R.18, E:R.18, B:R.18, B:R.18, A:R.18, A:R.18, F:R.18, F:R.18 DTP.6: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: DTP.1, DTP.2, DTP.3, DTP.4, DTP.5 12 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D, 2 interactions with chain E, 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain F Salt bridges: C:R.18, C:R.18, D:R.18, D:R.18, E:R.18, E:R.18, B:R.18, B:R.18, A:R.18, A:R.18, F:R.18, F:R.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jacques, D.A. et al., HIV-1 uses dynamic capsid pores to import nucleotides and fuel encapsidated DNA synthesis. Nature (2016)

Release Date

2016-08-10

Peptides

Capsid protein P24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Capsid protein P24

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