SMTL ID : 5hgp.1

Hexameric HIV-1 CA in complex with hexacarboxybenzene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-hexamer

Ligands

6 x BHC: BENZENE HEXACARBOXYLIC ACID(Non-covalent)

BHC.1: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: BHC.2, BHC.3, BHC.4, BHC.5, BHC.6 24 PLIP interactions: 4 interactions with chain A, 4 interactions with chain C, 4 interactions with chain E, 4 interactions with chain B, 4 interactions with chain D, 4 interactions with chain F Water bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 Salt bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 BHC.2: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: BHC.1, BHC.3, BHC.4, BHC.5, BHC.6 24 PLIP interactions: 4 interactions with chain A, 4 interactions with chain C, 4 interactions with chain E, 4 interactions with chain B, 4 interactions with chain D, 4 interactions with chain F Water bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 Salt bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 BHC.3: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: BHC.1, BHC.2, BHC.4, BHC.5, BHC.6 24 PLIP interactions: 4 interactions with chain A, 4 interactions with chain C, 4 interactions with chain E, 4 interactions with chain B, 4 interactions with chain D, 4 interactions with chain F Water bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 Salt bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 BHC.4: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: BHC.1, BHC.2, BHC.3, BHC.5, BHC.6 24 PLIP interactions: 4 interactions with chain A, 4 interactions with chain C, 4 interactions with chain E, 4 interactions with chain B, 4 interactions with chain D, 4 interactions with chain F Water bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 Salt bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 BHC.5: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: BHC.1, BHC.2, BHC.3, BHC.4, BHC.6 24 PLIP interactions: 4 interactions with chain A, 4 interactions with chain C, 4 interactions with chain E, 4 interactions with chain B, 4 interactions with chain D, 4 interactions with chain F Water bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 Salt bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 BHC.6: 11 residues within 4Å: Chain A: R.18 Chain B: R.18 Chain C: R.18 Chain D: R.18 Chain E: R.18 Chain F: R.18 Ligands: BHC.1, BHC.2, BHC.3, BHC.4, BHC.5 24 PLIP interactions: 4 interactions with chain A, 4 interactions with chain C, 4 interactions with chain E, 4 interactions with chain B, 4 interactions with chain D, 4 interactions with chain F Water bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18 Salt bridges: A:R.18, A:R.18, C:R.18, C:R.18, E:R.18, E:R.18, B:R.18, B:R.18, D:R.18, D:R.18, F:R.18, F:R.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jacques, D.A. et al., HIV-1 uses dynamic capsid pores to import nucleotides and fuel encapsidated DNA synthesis. Nature (2016)

Release Date

2016-10-19

Peptides

Capsid protein P24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Capsid protein P24

Related Entries With Identical Sequence