SMTL ID : 4wuu.1

Structure of ESK1 in complex with HLA-A*0201/WT1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ARG- MET- PHE- PRO- ASN- ALA- PRO- TYR- LEU: ARG-MET-PHE-PRO-ASN-ALA-PRO-TYR-LEU(Non-covalent)

ARG-MET-PHE-PRO-ASN-ALA-PRO-TYR-LEU.1: 40 residues within 4Å: Chain A: M.6, Y.8, F.10, F.34, M.46, Y.60, E.64, K.67, V.68, A.70, H.71, T.74, H.75, V.77, D.78, T.81, L.82, Y.85, V.96, R.98, Y.100, Y.117, Y.124, T.144, K.147, W.148, V.153, Q.156, L.157, Y.160, T.164, W.168, Y.172 Chain C: S.31, N.32, W.92, D.94 Chain D: S.102, G.103, Y.104 29 PLIP interactions: 24 interactions with chain A, 2 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: A:T.74, A:V.77, A:D.78, A:L.82, A:Y.117, A:Y.124, A:Q.156, A:L.157, A:Y.160, A:W.168, C:D.94, D:Y.104 Hydrogen bonds: A:Y.8, A:E.64, A:D.78, A:Y.85, A:R.98, A:R.98, A:Y.100, A:Y.100, A:T.144, A:W.148, A:Y.160, A:T.164, A:T.164, C:N.32, D:S.102 Salt bridges: A:K.147 pi-Cation interactions: D:Y.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ataie, N. et al., Structure of a TCR-Mimic Antibody with Target Predicts Pharmacogenetics. J.Mol.Biol. (2016)

Release Date

2015-12-30

Peptides

HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B
ESK1: C
IMMUNOGLOBULIN HEAVY CHAIN: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

HLA class I histocompatibility antigen, A-2 alpha chain

Beta-2-microglobulin

ESK1

IMMUNOGLOBULIN HEAVY CHAIN

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