SMTL ID : 5akv.1

Transthyretin binding heterogeneity and anti-amyloidogenic activity of natural polyphenols and their metabolites: genistein-7-O- glucuronide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-tetramer

Ligands

4 x G7G: Genistein-7-O-glucuronide(Non-covalent)

G7G.1: 16 residues within 4Å: Chain A: K.15, L.17, E.54, A.108, L.110, S.117, T.119 Chain C: M.13, K.15, L.17, E.54, A.108, L.110, S.117, T.119 Ligands: G7G.3 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:K.15, A:L.17, A:L.110, C:K.15, C:L.110 Hydrogen bonds: A:S.117, C:E.54, C:S.117 Salt bridges: A:K.15, C:K.15 G7G.2: 18 residues within 4Å: Chain B: M.13, K.15, L.17, E.54, H.56, T.106, A.108, L.110, S.117, T.119 Chain D: K.15, L.17, E.54, A.108, L.110, S.117, T.119 Ligands: G7G.4 11 PLIP interactions: 6 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:L.110, B:L.110, D:L.17 Hydrogen bonds: B:S.117, D:K.15, D:K.15, D:S.117 Salt bridges: B:K.15, B:K.15, B:H.56, D:K.15 G7G.3: 16 residues within 4Å: Chain A: M.13, K.15, L.17, E.54, A.108, L.110, S.117, T.119 Chain C: K.15, L.17, E.54, A.108, L.110, S.117, T.119 Ligands: G7G.1 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:K.15, A:L.110, C:K.15, C:L.17, C:L.110 Hydrogen bonds: A:E.54, A:S.117, C:S.117 Salt bridges: A:K.15, C:K.15 G7G.4: 18 residues within 4Å: Chain B: K.15, L.17, E.54, A.108, L.110, S.117, T.119 Chain D: M.13, K.15, L.17, E.54, H.56, T.106, A.108, L.110, S.117, T.119 Ligands: G7G.2 11 PLIP interactions: 5 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: B:L.17, D:L.110, D:L.110 Hydrogen bonds: B:K.15, B:K.15, B:S.117, D:S.117 Salt bridges: B:K.15, D:K.15, D:K.15, D:H.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Florio, P. et al., Transthyretin Binding Heterogeneity and Anti-Amyloidogenic Activity of Natural Polyphenols and Their Metabolites. J.Biol.Chem. (2015)

Release Date

2015-10-21

Peptides

TRANSTHYRETIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

TRANSTHYRETIN

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