SMTL ID : 5d7x.1

Crystal structure of the human BRPF1 bromodomain in complex with XZ08

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 5 residues within 4Å: Chain A: T.25, G.26, I.28, A.93, R.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.25, A:G.26, A:R.96 Water bridges: A:T.25

1 x XZ8: 4-(1-acetyl-1H-indol-3-yl)-5-methyl-1,2-dihydro-3H-pyrazol-3-one(Non-covalent)

XZ8.2: 10 residues within 4Å: Chain A: I.28, F.29, E.31, P.32, V.33, P.34, V.38, C.80, N.84, F.90 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.29, A:V.33, A:V.38, A:F.90 Hydrogen bonds: A:N.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unzue, A. et al., The "Gatekeeper" Residue Influences the Mode of Binding of Acetyl Indoles to Bromodomains. J.Med.Chem. (2016)

Release Date

2016-05-25

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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