SMTL ID : 5e23.1

Human transthyretin (TTR) complexed with (2,7-Dibromo-fluoren-9-ylideneaminooxy)-acetic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

homo-tetramer

Ligands

2 x L32: {[(2,7-dibromo-9H-fluoren-9-ylidene)amino]oxy}acetic acid(Non-covalent)

L32.1: 16 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, L.110, V.121 Chain C: K.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119, V.121 Ligands: L32.3 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:K.15, C:L.17, C:A.108, A:K.15, A:L.17, A:T.106, A:A.108 Hydrogen bonds: C:L.110, C:S.117, C:T.119 Halogen bonds: C:T.106, A:T.106 L32.3: 16 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119, V.121 Chain C: K.15, L.17, T.106, A.108, L.110, V.121 Ligands: L32.1 12 PLIP interactions: 5 interactions with chain C, 7 interactions with chain A Hydrophobic interactions: C:K.15, C:L.17, C:T.106, C:A.108, A:K.15, A:L.17, A:A.108 Halogen bonds: C:T.106, A:T.106 Hydrogen bonds: A:L.110, A:S.117, A:T.119

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: I.26, N.27, K.48, T.49, S.50 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.27 DMS.4: 5 residues within 4Å: Chain C: I.26, N.27, K.48, T.49, S.50 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ciccone, L. et al., Synthesis and structural analysis of halogen substituted fibril formation inhibitors of Human Transthyretin (TTR). J Enzyme Inhib Med Chem (2016)

Release Date

2016-03-23

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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