SMTL ID : 5em3.1

Crystal structure of the human BRPF1 bromodomain in complex with SEED9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x 5Q0: quinolin-5-ol(Non-covalent)

5Q0.1: 8 residues within 4Å: Chain A: I.28, V.33, P.34, Y.41, Y.83, N.84, F.90 Ligands: 5Q0.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.33, A:Y.83, A:F.90 Hydrogen bonds: A:N.84 5Q0.2: 9 residues within 4Å: Chain A: I.28, F.29, V.33, P.34, V.38, C.80, N.84, F.90 Ligands: 5Q0.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.29, A:V.33, A:V.38, A:F.90 Hydrogen bonds: A:N.84, A:N.84

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 4 residues within 4Å: Chain A: L.81, Y.91, V.95, R.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.91, A:R.98, A:R.98 NO3.4: 6 residues within 4Å: Chain A: T.25, G.26, I.28, I.89, A.93, R.96 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.26, A:R.96 Water bridges: A:T.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions. J.Med.Chem. (2016)

Release Date

2016-06-08

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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