SMTL ID : 5fck.1

COMPLEMENT FACTOR D IN COMPLEX WITH COMPOUND 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x 5WC: 1-[2-[(1~{R},3~{S},5~{R})-3-[[(1~{R})-1-(3-chloranyl-2-fluoranyl-phenyl)ethyl]carbamoyl]-2-azabicyclo[3.1.0]hexan-2-yl]-2-oxidanylidene-ethyl]pyrazolo[3,4-c]pyridine-3-carboxamide(Non-covalent)

5WC.1: 21 residues within 4Å: Chain A: H.24, L.25, C.26, H.41, C.42, W.128, G.129, I.130, R.137, S.178, C.179, K.180, G.181, S.183, V.197, T.198, S.199, G.200, S.201, R.202, C.204 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.25, A:I.130, A:R.137, A:K.180, A:R.202 Hydrogen bonds: A:L.25, A:G.181, A:S.183, A:T.198, A:R.202 Water bridges: A:S.178, A:S.178, A:G.200 Halogen bonds: A:L.25, A:W.128

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: E.6, A.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.6 Water bridges: A:E.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maibaum, J. et al., Small-molecule factor D inhibitors targeting the alternative complement pathway. Nat.Chem.Biol. (2016)

Release Date

2016-10-26

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

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