SMTL ID : 5jid.1

Crystal Structure of Human Transthyretin in Complex with Perfluorooctanoic acid (PFOA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-tetramer

Ligands

4 x 8PF: pentadecafluorooctanoic acid(Non-covalent)

8PF.1: 16 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain B: S.115 Chain C: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: 8PF.4 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Water bridges: A:K.15 Salt bridges: A:K.15, C:K.15 Halogen bonds: A:S.117 8PF.2: 15 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.119 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: 8PF.5 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Salt bridges: D:K.15, B:K.15 Water bridges: B:K.15 8PF.4: 16 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.119 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain D: S.115 Ligands: 8PF.1 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Water bridges: C:K.15 Salt bridges: C:K.15, A:K.15 Halogen bonds: C:S.117 8PF.5: 15 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: 8PF.2 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Water bridges: D:K.15 Salt bridges: D:K.15, B:K.15

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain B: E.66, D.99, S.100 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.66 Water bridges: B:G.101 NA.6: 3 residues within 4Å: Chain D: E.66, D.99, S.100 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.99 Water bridges: D:G.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Structure-Based Virtual Screening Protocol for in Silico Identification of Potential Thyroid Disrupting Chemicals Targeting Transthyretin. Environ. Sci. Technol. (2016)

Release Date

2016-10-05

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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