SMTL ID : 5l4m.1

Crystal Structure of Human Transthyretin in Complex with 3,5,6-Trichloro-2-pyridinyloxyacetic acid (Triclopyr)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-tetramer

Ligands

4 x SBK: Triclopyr(Non-covalent)

SBK.1: 14 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: SBK.4 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Salt bridges: C:K.15, A:K.15 Halogen bonds: C:S.117 SBK.3: 14 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: SBK.6 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Water bridges: D:K.15, B:K.15 Salt bridges: D:K.15, B:K.15 Halogen bonds: D:S.117 SBK.4: 14 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain C: K.15, L.17, A.108, A.109, L.110 Ligands: SBK.1 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Salt bridges: A:K.15, C:K.15 Halogen bonds: A:S.117 SBK.6: 14 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, A.108, A.109, L.110 Ligands: SBK.3 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Water bridges: B:K.15, D:K.15 Salt bridges: B:K.15, D:K.15 Halogen bonds: B:S.117

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: E.66, D.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.99 Water bridges: A:G.101 NA.5: 2 residues within 4Å: Chain C: E.66, D.99 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.66 Water bridges: C:G.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Structure-Based Virtual Screening Protocol for in Silico Identification of Potential Thyroid Disrupting Chemicals Targeting Transthyretin. Environ. Sci. Technol. (2016)

Release Date

2016-10-05

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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