SMTL ID : 5o5f.1

Crystal structure of the human BRPF1 bromodomain in complex with BZ038

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x 9LT: 1-ethyl-~{N}-[(~{R})-(3-fluorophenyl)-(1-methylimidazol-2-yl)methyl]-2,3-bis(oxidanylidene)-4~{H}-quinoxaline-6-carboxamide(Non-covalent)

9LT.1: 11 residues within 4Å: Chain A: I.28, F.29, V.33, P.34, E.37, V.38, C.80, Y.83, N.84, F.90 Ligands: NO3.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.28, A:F.29, A:P.34, A:V.38, A:F.90, A:F.90 Hydrogen bonds: A:N.84 Water bridges: A:N.84

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 4 residues within 4Å: Chain A: L.81, Y.91, V.95, R.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.91, A:Y.91, A:R.98, A:R.98 NO3.3: 3 residues within 4Å: Chain A: I.28, F.90 Ligands: 9LT.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., Structure-based discovery of selective BRPF1 bromodomain inhibitors. Eur J Med Chem (2018)

Release Date

2018-06-13

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

Related Entries With Identical Sequence