SMTL ID : 5o5h.1

Crystal structure of the human BRPF1 bromodomain in complex with BZ053

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x 9LK: ~{N}-[6-(4-chloranylphenoxy)pyridin-3-yl]-2,4-dimethyl-1,3-oxazole-5-carboxamide(Non-covalent)

9LK.1: 11 residues within 4Å: Chain A: I.28, F.29, V.33, P.34, E.37, V.38, C.80, Y.83, N.84, F.90 Ligands: 9LK.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.29, A:P.34, A:E.37, A:Y.83 Hydrogen bonds: A:N.84 pi-Stacking: A:F.90 9LK.2: 11 residues within 4Å: Chain A: I.28, F.29, V.33, P.34, E.37, V.38, C.80, Y.83, N.84, F.90 Ligands: 9LK.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.29, A:V.33, A:P.34, A:Y.83 Hydrogen bonds: A:N.84 pi-Stacking: A:F.90

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 4 residues within 4Å: Chain A: L.81, Y.91, V.95, R.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.91, A:Y.91, A:R.98, A:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., Structure-based discovery of selective BRPF1 bromodomain inhibitors. Eur J Med Chem (2018)

Release Date

2018-06-13

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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