SMTL ID : 5q0q.1 (1 other biounit)

Ligand binding to FARNESOID-X-RECEPTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 9LD: ethyl 4-({2-phenyl-5-[(thiophen-2-yl)sulfonyl]-4,5,6,7-tetrahydro-2H-pyrazolo[4,3-c]pyridine-3-carbonyl}amino)benzoate(Non-covalent)

9LD.1: 23 residues within 4Å: Chain A: R.25, M.26, F.45, L.48, T.49, M.51, A.52, N.54, H.55, V.58, M.89, R.92, S.93, I.96, F.97, L.109, I.113, I.118, Y.130, H.208, M.211, F.222, W.230 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.48, A:M.51, A:A.52, A:H.55, A:R.92, A:I.96, A:F.97, A:L.109, A:I.113, A:F.222, A:W.230 Hydrogen bonds: A:N.54, A:S.93, A:H.208 Salt bridges: A:R.92 pi-Stacking: A:F.45, A:H.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaieb, Z. et al., D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des. (2018)

Release Date

2017-07-05

Peptides

Bile acid receptor: A
COACTIVATOR PEPTIDE SRC-1 HD3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bile acid receptor

COACTIVATOR PEPTIDE SRC-1 HD3

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