SMTL ID : 5q0w.1

Ligand binding to FARNESOID-X-RECEPTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 9LV: 4-({5-bromo-1'-[(2-chlorophenyl)sulfonyl]-2-oxospiro[indole-3,4'-piperidin]-1(2H)-yl}methyl)benzoic acid(Non-covalent)

9LV.1: 23 residues within 4Å: Chain A: Q.24, R.25, M.26, P.27, L.48, M.51, A.52, N.54, H.55, V.58, M.89, F.90, R.92, S.93, I.96, F.97, L.109, I.113, M.126, H.208, M.211, W.215, W.230 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.54, A:H.55, A:R.92, A:I.96, A:I.96, A:I.113, A:W.215, A:W.230 Hydrogen bonds: A:Q.24, A:N.54 Water bridges: A:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaieb, Z. et al., D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des. (2018)

Release Date

2017-07-05

Peptides

Bile acid receptor: A
cDNA FLJ76652, highly similar to Homo sapiens nuclear receptor coactivator 1 (NCOA1), transcript variant 2, mRNA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bile acid receptor

cDNA FLJ76652, highly similar to Homo sapiens nuclear receptor coactivator 1 (NCOA1), transcript variant 2, mRNA

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