SMTL ID : 5q1c.2 (1 other biounit)

Ligand binding to FARNESOID-X-RECEPTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 9NA: (2S)-2-cyclohexyl-2-[2-(2,6-dimethoxypyridin-3-yl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(trans-4-hydroxycyclohexyl)acetamide(Non-covalent)

9NA.1: 20 residues within 4Å: Chain A: I.30, T.31, I.34, N.44, L.48, M.51, H.55, M.89, F.90, R.92, S.93, I.96, F.97, L.109, I.113, S.116, I.118, M.126, Y.130, H.208 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.30, A:N.44, A:L.48, A:H.55, A:I.96, A:I.113, A:I.118, A:Y.130 Hydrogen bonds: A:S.93, A:S.93, A:Y.130 Water bridges: A:R.25, A:H.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaieb, Z. et al., D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des. (2018)

Release Date

2017-07-05

Peptides

Bile acid receptor: A
COACTIVATOR PEPTIDE SRC-1 HD3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Bile acid receptor

COACTIVATOR PEPTIDE SRC-1 HD3

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