SMTL ID : 5q1i.1

Ligand binding to FARNESOID-X-RECEPTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 9O1: 3-(2-chlorophenyl)-N-[(1R)-1-(naphthalen-2-yl)ethyl]-5-(propan-2-yl)-1,2-oxazole-4-carboxamide(Non-covalent)

9O1.1: 17 residues within 4Å: Chain A: F.45, L.48, T.49, M.51, A.52, H.55, M.89, F.90, S.93, I.96, F.97, L.109, I.113, I.118, M.126, Y.130, W.230 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.45, A:L.48, A:M.51, A:A.52, A:H.55, A:F.90, A:F.97, A:L.109, A:I.113, A:Y.130 Hydrogen bonds: A:S.93, A:S.93, A:Y.130 pi-Stacking: A:W.230 pi-Cation interactions: A:H.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaieb, Z. et al., D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des. (2018)

Release Date

2017-07-05

Peptides

Bile acid receptor: A
COACTIVATOR PEPTIDE SRC-1 HD3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bile acid receptor

COACTIVATOR PEPTIDE SRC-1 HD3

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