SMTL ID : 5q18.1 (1 other biounit)

Ligand binding to FARNESOID-X-RECEPTOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 9MY: (2S)-2-cyclohexyl-2-{5,6-difluoro-2-[(R)-methoxy(phenyl)methyl]-1H-benzimidazol-1-yl}-N-(trans-4-hydroxycyclohexyl)acetamide(Non-covalent)

9MY.1: 21 residues within 4Å: Chain A: I.30, T.31, I.34, N.44, I.47, L.48, M.51, H.55, M.89, F.90, S.93, I.96, F.97, L.109, I.113, S.116, I.118, I.123, M.126, Y.130, W.215 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.30, A:I.30, A:I.34, A:I.47, A:H.55, A:I.96, A:I.113, A:I.113, A:I.113, A:I.118, A:I.123, A:Y.130, A:W.215 Hydrogen bonds: A:S.93, A:S.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaieb, Z. et al., D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des. (2018)

Release Date

2017-07-05

Peptides

Bile acid receptor: A
COACTIVATOR PEPTIDE SRC-1 HD3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bile acid receptor

COACTIVATOR PEPTIDE SRC-1 HD3

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