SMTL ID : 5q1e.1

Ligand binding to FARNESOID-X-RECEPTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 9NG: 5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one(Non-covalent)

9NG.1: 22 residues within 4Å: Chain A: Q.24, R.25, M.26, P.27, L.48, M.51, A.52, N.54, H.55, V.58, M.89, R.92, S.93, I.96, F.97, L.109, I.113, I.118, M.126, H.208, M.211, W.230 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.48, A:H.55, A:R.92, A:I.96, A:I.96, A:I.113 Hydrogen bonds: A:N.54 Water bridges: A:R.25, A:R.25, A:N.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaieb, Z. et al., D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J. Comput. Aided Mol. Des. (2018)

Release Date

2017-07-05

Peptides

Bile acid receptor: A
COACTIVATOR PEPTIDE SRC-1 HD3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bile acid receptor

COACTIVATOR PEPTIDE SRC-1 HD3

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